Protein ZmCOL13
ZmCOL13 is a protein in the C2C2-CO-like family.
Information
TF Name: ZmCOL13
Species: Maize
TF Family: C2C2-CO-like
Gene Name(Synonym): COL13
Uniprot ID: A0A1D6PDQ1

Protein ZmCOL13

ZmCOL13 is a protein in the C2C2-CO-like family. NOTE the "Uniprot ID" shown on the right is a placeholder for testing. The interactive structure shown is based on that id.

Protein-DNA Interactions

Meme Logos for Maize v4 Gene IDs


Gene IDTypeMEME LogoSequenceFIMOPosition
Zm00001d046925DAPseq no logo sequence fimo position
Zm00001d046925DAPseq no logo sequence fimo position
Zm00001d046925ChIPseq no logo sequence fimo position
Zm00001d046925PChIPseq no logo sequence fimo position

Interactions where ZmCOL13 is the regulator  
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There are 1720 protein-dna interactions that fit this criteria. download excel sheet

Interactions where ZmCOL13 is the target  
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There are 210 protein-dna interactions that fit this criteria. download excel sheet

Zm00001eb389540_T003 from maize genome v5

Amino Acid Sequence
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MELHKYWGVGGRRCGSCEGAPAAVHCRTCVGGSFLCTTCDARPAHARLGHERVWMCEVCELAPAAVTCKADAAVLCAACD
SDIHDANPLARRHARVPVAPIGSEAAAAAVEAMLFGTGEAAASEADEQHAAAEHAHAHAHALNLNVEAKDMKLDYLFSEL
DPYLSVEIPRFQHADSVVPNGAGAAVELDFTCGIGVKHSSYSSYTATSLAHSGSSSEVGVVPEAFGGSGSGGGSFELDFT
RPKPQAYMPYTGTPQSHSVPSADVEVVPERGDLAAVRPVPLMGESREARLMRYREKRKNRRFEKTIRYASRKAYAETRPR
IKGRFAKRADHDGDADADDAEAEAEAAVPMSYVLDFGYGVVPSF

MELHKYWGVGGRRCGSCEGAPAAVHCRTCVGGSFLCTTCDARPAHARLGHERVWMCEVCELAPAAVTCKADAAVLCAACD
SDIHDANPLARRHARVPVAPIGSEAAAAAVEAMLFGTGEAAASEADEQHAAAEHAHAHAHALNLNVEAKDMKLDYLFSEL
DPYLSVEIPRFQHADSVVPNGAGAAVELDFTCGIGVKHSSYSSYTATSLAHSGSSSEVGVVPEAFGGSGSGGGSFELDFT
RPKPQAYMPYTGTPQSHSVPSADVEVVPERGDLAAVRPVPLMGESREARLMRYREKRKNRRFEKTIRYASRKAYAETRPR
IKGRFAKRADHDGDADADDAEAEAEAAVPMSYVLDFGYGVVPSF

Secondary Structure Color Code
BEND region with high backbone curvature without specific hydrogen bonding
HELX_LH_PP_P left-handed polyproline helix
HELX_RH_3T_P right-handed 3-10 helix
HELX_RH_AL_P right-handed alpha helix
HELX_RH_PI_P right-handed pi helix
STRN beta strand
TURN_TY1_P type I turn
UNDETERMINED no data available

Nucleotide Sequence
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GCTGCGCTGCCTCCCTCCACTACTA...

GRMZM2G038783_T01 from maize genome v3


Related TFome: pUT5885

Amino Acid Sequence
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MELHKYWGVGGRRCGSCEGAPAAVHCRTCVGGSFLCTTCDARPAHARLGHERVWMCEVCELAPAAVTCKADAAVLCAACD
SDIHDANPLARRHARVPVAPIGSEAAAAAVEAMLFGTGEAAASEADEQHAAAEHAHAHAHALNLNVEAKDMKLDYLFSEL
DPYLSVEIPRFQHADSVVPNGAGAAVELDFTCGIGVKHSSYSSYTATSLAHSGSSSEVGVVPEAFGGSGSGGGSFELDFT
RPKPQAYMPYTGTPQSHSVPSADVEVVPERGDLAAVRPVPLMGESREARLMRYREKRKNRRFEKTIRYASRKAYAETRPR
IKGRFAKRADHDGDADADDAEAEAEAAVPMSYVLDFGYGVVPSF

Nucleotide Sequence
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GCTGCGCTGCCTCCCTCCACTACTA...

GRMZM2G038783_T02 from maize genome v3

Amino Acid Sequence
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MELHKYWGVGGRRCGSCEGAPAAVHCRTCVGGSFLCTTCDARPAHARLGHERVWMCEVCELAPAAVTCKADAAVLCAACD
SDIHDANPLARRHARVPVAPIGSEAAAAAVEAMLFGTGEAAASEADEQHAAAEHAHAHAHALNLNVEAKDMKLDYLFSEL
DPYLSVEIPRFQHADSVVPNGAGAAVELDFTCGIGVKHSSYSSYTATSLAHSGSSSEVGVVPEAFGGSGSGGGSFELDFT
RPKPQAYMPYTGTPQSHSVGPQPSSQLSGRTSVRHSMCSS

Nucleotide Sequence
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GCTGCGCTGCCTCCCTCCACTACTA...

Zm00001d046925_T001 from maize genome v4

Amino Acid Sequence
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MELHKYWGVGGRRCGSCEGAPAAVHCRTCVGGSFLCTTCDARPAHARLGHERVWMCEVCELAPAAVTCKADAAVLCAACD
SDIHDANPLARRHARVPVAPIGSEAAAAAVEAMLFGTGEAAASEADEQHAAAEHAHAHAHALNLNVEAKDMKLDYLFSEL
DPYLSVEIPRFQHADSVVPNGAGAAVELDFTCGIGVKHSSYSSYTATSLAHSGSSSEVGVVPEAFGGSGSGGGSFELDFT
RPKPQAYMPYTGTPQSHSVPSADVEVVPERGDLAAVRPVPLMGESREARLMRYREKRKNRRFEKTIRYASRKAYAETRPR
IKGRFAKRADHDGDADADDAEAEAEAAVPMSYVLDFGYGVVPSF

Nucleotide Sequence
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GCTGCGCTGCCTCCCTCCACTACTA...

Zm00001eb389540_T001 from maize genome v5

Amino Acid Sequence
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MELHKYWGVGGRRCGSCEGAPAAVHCRTCVGGSFLCTTCDARPAHARLGHERVWMCEVCELAPAAVTCKADAAVLCAACD
SDIHDANPLARRHARVPVAPIGSEAAAAAVEAMLFGTGEAAASEADEQHAAAEHAHAHAHALNLNVEAKDMKLDYLFSEL
DPYLSVEIPRFQHADSVVPNGAGAAVELDFTCGIGVKHSSYSSYTATSLAHSVSFALLLPCLAFRCIYHLGIETHVWSCG
HRPDGSCRAPRRRLAWCQRPSAAAAAAAGALSSTSQGPSLRPTCHTPGLPRATA

Nucleotide Sequence
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GCTGCGCTGCCTCCCTCCACTACTA...

Zm00001eb389540_T002 from maize genome v5

Amino Acid Sequence
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MELHKYWGVGGRRCGSCEGAPAAVHCRTCVGGSFLCTTCDARPAHARLGHERVWMCEVCELAPAAVTCKADAAVLCAACD
SDIHDANPLARRHARVPVAPIGSEAAAAAVEAMLFGTGEAAASEADEQHAAAEHAHAHAHALNLNVEAKDMKLDYLFSEL
DPYLSVEIPRFQHADSVVPNGAGAAVELDFTCGIGVKHSSYSSYTATSLAHSVSFALLLPCLAFRCIYHLGIETHVWSCG
HRPDGSCRAPRRRLAWCQRPSAAAAAAAGALSSTSQGPSLRPTCHTPGLPRATACHPRTWRWCRSGETWLR

Nucleotide Sequence
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GCTGCGCTGCCTCCCTCCACTACTA...


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